PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 135aa    MW: 14780.4 Da    PI: 5.1908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028580.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.3e-0885130454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+ Rdr+N +  eL   + +       +++K++ L  Av YI++L
  Do028580.1  85 SHMEAERQHRDRLNRRSCELHAAVTTV-----SRMDKVSLLADAVAYISEL 130
                 799***********************6.....49***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.97981130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1084134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-685130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-885135No hitNo description
Gene3DG3DSA:4.10.280.105.8E-1085134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MADELAYPAS TCSSPSPASF FSTAGHYQEL DFVSSEVLEQ WLGSEDCLDG TVWDDDGLSN  60
GQPPVPAPKK RGRKPGPRTN GPPISHMEAE RQHRDRLNRR SCELHAAVTT VSRMDKVSLL  120
ADAVAYISEL HDSVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406793e-47BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds.
GenBankKJ7267873e-47KJ726787.1 Zea mays clone pUT2108 bHLH transcription factor (bHLH145) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444645.17e-51hypothetical protein SORBIDRAFT_07g025330
SwissprotQ392041e-17MYC2_ARATH; Transcription factor MYC2
TrEMBLC5YH828e-51C5YH82_SORBI; Putative uncharacterized protein Sb07g025330
STRINGSb07g025330.12e-50(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.33e-13bHLH family protein